miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lactuca perennis



ABOUT THIS RECORD

ID: MNEST001301
species: Lactuca perennis
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCATCA

miRNA*
ATGGTGGTGGTGGTGGTGGTG

mismatches: 1
bulges: 0

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pre-miRNA
TAGTTCCACTTCAATTGGCATGCGAATACAATATTCAAAGAACCCGTTTGGGAAACGGAAGGATGGTGGTGGTGGTGGTGGTGGGTACCCAGTGTCGAAT
GGATCACTGGCGGTTGTTAGTTACCAATAGCTGGAAGGGGATGTACTCTGTTTTTTCTCTATGGTTTGACAAAAAGAACATACTATTACTCATAGGATGC
ATAATGGTGGTGGGCATGCATCCATTTCATCATCATCATCATCATCATCAAGTCATGATCATGCTCATGATCATGCTCATGAACAATGCATTAGCATATA
TCACTT


dot-bracket secondary structure
..((.(((.......))).))..(((((...))))).......((((((...))))))...((((((((((((((((((((((((((.((((((((....
.)).))))))((((((((.......))))))))..((((((...((...))...))))))(((((.((..........)).)))))))))))..((((((
((.............))))))))...)))))))))))))))))))).(((((.(((((((((....)))))))))))..)))...((((....))))...
......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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